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Species belonging to selected taxon:

Ipomoea batatas



ABOUT THIS RECORD

ID: MNEST001275
species: Ipomoea batatas
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

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pre-miRNA
CATGTGTGTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAG
CTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATTGTTT


dot-bracket secondary structure
.....(..((((.((((.((((.(((((.((((((((((.(((((.(((....((((((..((.(((.((((....)))).))))).))))))....)))
.))))).)))))))))).))))).)))).)))).))))..)....



SIMILARITIES
miRBase crt-MIR168: 0.000000000000008

PMRD rco-miR168: 0.000000000000008

microPC miR168: 2e-49
UniProt no hits

RFAM MIR168: 0.0000000000001
most similar mature miRNAs

Identical with: miR168 from microPC (MNEST046717)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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